ClinVar Miner

Submissions for variant NM_007194.4(CHEK2):c.593-1G>T (rs786203229)

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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000566129 SCV000666386 likely pathogenic Hereditary cancer-predisposing syndrome 2017-10-18 criteria provided, single submitter clinical testing Lines of evidence used in support of classification: Alterations at the canonical donor/acceptor sites (+/- 1, 2) without other strong (b-level) evidence supporting pathogenicity
Color RCV000566129 SCV000689703 likely pathogenic Hereditary cancer-predisposing syndrome 2018-09-02 criteria provided, single submitter clinical testing
Counsyl RCV000195929 SCV000677829 likely pathogenic Familial cancer of breast 2017-04-05 criteria provided, single submitter clinical testing
Invitae RCV000195929 SCV000253713 likely pathogenic Familial cancer of breast 2018-10-30 criteria provided, single submitter clinical testing This sequence change affects an acceptor splice site in intron 4 of the CHEK2 gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has been reported in an individual affected with breast cancer (PMID: 25186627). ClinVar contains an entry for this variant (Variation ID: 216003). Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in CHEK2 are known to be pathogenic (PMID: 21876083, 24713400). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.
Mendelics RCV000195929 SCV000839483 likely pathogenic Familial cancer of breast 2018-07-02 criteria provided, single submitter clinical testing

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