ClinVar Miner

Submissions for variant NM_007254.4(PNKP):c.499-4C>G

gnomAD frequency: 0.00001  dbSNP: rs545573584
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001224670 SCV001396884 uncertain significance Developmental and epileptic encephalopathy, 12 2019-06-25 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. This variant has not been reported in the literature in individuals with PNKP-related conditions. This variant is present in population databases (rs545573584, ExAC 0.02%). This sequence change falls in intron 4 of the PNKP gene. It does not directly change the encoded amino acid sequence of the PNKP protein.

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