ClinVar Miner

Submissions for variant NM_007294.4(BRCA1):c.3013del (p.Glu1005fs)

dbSNP: rs80357937
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Total submissions: 7
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Evidence-based Network for the Interpretation of Germline Mutant Alleles (ENIGMA) RCV000077533 SCV000299871 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2016-09-08 reviewed by expert panel curation Variant allele predicted to encode a truncated non-functional protein.
Ambry Genetics RCV000213487 SCV000276535 pathogenic Hereditary cancer-predisposing syndrome 2018-08-25 criteria provided, single submitter clinical testing The c.3013delG pathogenic mutation, located in coding exon 9 of the BRCA1 gene, results from a deletion of one nucleotide at nucleotide position 3013, causing a translational frameshift with a predicted alternate stop codon (p.E1005Nfs*19). This mutation (designated as 3131delG) was reported in a breast cancer family in the literature (Goelen G et al. J. Med. Genet. 1999 Apr;36:304-8). In addition to the clinical data presented in the literature, this alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.
Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA), c/o University of Cambridge RCV000077533 SCV000325527 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2015-10-02 criteria provided, single submitter clinical testing
Color Diagnostics, LLC DBA Color Health RCV000213487 SCV000909324 pathogenic Hereditary cancer-predisposing syndrome 2020-01-15 criteria provided, single submitter clinical testing This variant deletes 1 nucleotide in exon 10 of the BRCA1 gene, creating a frameshift and premature translation stop signal. This variant is expected to result in an absent or non-functional protein product. This variant has not been identified in the general population by the Genome Aggregation Database (gnomAD). Loss of BRCA1 function is a known mechanism of disease (clinicalgenome.org). Based on the available evidence, this variant is classified as Pathogenic.
Invitae RCV001387504 SCV001588157 pathogenic Hereditary breast ovarian cancer syndrome 2021-02-18 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. Loss-of-function variants in BRCA1 are known to be pathogenic. This particular variant has been reported in the literature in individuals affected or suspected of being affected with hereditary breast/ovarian cancer (PMID: 10227398, 22762150). This variant is also known as 3131delG in the literature. This sequence change deletes 1 nucleotide from exon 10 of the BRCA1 mRNA (c.3013delG), causing a frameshift at codon 1005. This creates a premature translational stop signal (p.Glu1005Asnfs*19) and is expected to result in an absent or disrupted protein product.
Sharing Clinical Reports Project (SCRP) RCV000077533 SCV000109334 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2007-05-03 no assertion criteria provided clinical testing
Breast Cancer Information Core (BIC) (BRCA1) RCV000077533 SCV000144608 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2002-05-29 no assertion criteria provided clinical testing

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