ClinVar Miner

Submissions for variant NM_007294.4(BRCA1):c.3785C>A (p.Ser1262Ter)

dbSNP: rs80357269
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Total submissions: 8
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Evidence-based Network for the Interpretation of Germline Mutant Alleles (ENIGMA) RCV000112186 SCV000300021 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2016-09-08 reviewed by expert panel curation Variant allele predicted to encode a truncated non-functional protein.
Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA), c/o University of Cambridge RCV000112186 SCV000325756 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2015-10-02 criteria provided, single submitter clinical testing
Invitae RCV001853002 SCV002135640 pathogenic Hereditary breast ovarian cancer syndrome 2023-08-24 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. ClinVar contains an entry for this variant (Variation ID: 55006). This variant is also known as 3904C>A. This premature translational stop signal has been observed in individual(s) with a personal and/or family history of breast and ovarian cancer (PMID: 9361038, 23479189, 29446198). This variant is not present in population databases (gnomAD no frequency). This sequence change creates a premature translational stop signal (p.Ser1262*) in the BRCA1 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in BRCA1 are known to be pathogenic (PMID: 20104584).
Ambry Genetics RCV002362682 SCV002625787 pathogenic Hereditary cancer-predisposing syndrome 2020-04-23 criteria provided, single submitter clinical testing The p.S1262* pathogenic mutation (also known as c.3785C>A), located in coding exon 9 of the BRCA1 gene, results from a C to A substitution at nucleotide position 3785. This changes the amino acid from a serine to a stop codon within coding exon 9. This alteration was reported in one family from eastern Spain with at least three individuals with breast cancer (de Juan Jiménez I et al. Fam. Cancer, 2013 Dec;12:767-77; Rebbeck TR et al. Hum. Mutat., 2018 05;39:593-620). In addition to the information presented in the literature, this alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.
Quest Diagnostics Nichols Institute San Juan Capistrano RCV002477171 SCV002774310 pathogenic not provided 2021-06-16 criteria provided, single submitter clinical testing This nonsense variant is predicted to cause the premature termination of BRCA1 protein synthesis. This variant has not been reported in large, multi-ethnic general populations (http://gnomad.broadinstitute.org). In addition, it has been identified in individuals with BRCA-related cancers in the published literature (PMID: 29446198 (2018), 23479189 (2013), 20033483 (2010), 9361038 (1997)). Based on the available information, this variant is classified as pathogenic.
Baylor Genetics RCV000112186 SCV004216937 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2022-07-29 criteria provided, single submitter clinical testing
Breast Cancer Information Core (BIC) (BRCA1) RCV000112186 SCV000144881 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 1997-11-18 no assertion criteria provided clinical testing
BRCAlab, Lund University RCV000112186 SCV004244024 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2020-03-02 no assertion criteria provided clinical testing

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