ClinVar Miner

Submissions for variant NM_007294.4(BRCA1):c.5150del (p.Phe1717fs)

dbSNP: rs80357720
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Total submissions: 9
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Evidence-based Network for the Interpretation of Germline Mutant Alleles (ENIGMA) RCV000112511 SCV000300211 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2016-09-08 reviewed by expert panel curation Variant allele predicted to encode a truncated non-functional protein.
GeneKor MSA RCV000048818 SCV000296778 pathogenic Familial cancer of breast 2020-01-01 criteria provided, single submitter clinical testing This sequence change deletes one nucleotide base causing a frameshift and the creation of a premature translation stop signal 2 amino acid residues later. This is expected to result in an absent or disrupted protein product.
Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA), c/o University of Cambridge RCV000112511 SCV000326171 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2015-10-02 criteria provided, single submitter clinical testing
Counsyl RCV000112511 SCV000489609 likely pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2016-10-28 criteria provided, single submitter clinical testing
Ambry Genetics RCV000569434 SCV000673065 pathogenic Hereditary cancer-predisposing syndrome 2024-07-30 criteria provided, single submitter clinical testing The c.5150delT pathogenic mutation, located in coding exon 16 of the BRCA1 gene, results from a deletion of one nucleotide at nucleotide position 5150, causing a translational frameshift with a predicted alternate stop codon (p.F1717Sfs*3). This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.
Labcorp Genetics (formerly Invitae), Labcorp RCV001389635 SCV001591065 pathogenic Hereditary breast ovarian cancer syndrome 2022-08-10 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. This sequence change creates a premature translational stop signal (p.Phe1717Serfs*3) in the BRCA1 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in BRCA1 are known to be pathogenic (PMID: 20104584). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with BRCA1-related conditions. This variant is also known as 5269delT. ClinVar contains an entry for this variant (Variation ID: 55422).
Baylor Genetics RCV000112511 SCV004216948 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2022-06-16 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV004998174 SCV005626135 pathogenic not provided 2024-11-18 criteria provided, single submitter clinical testing The BRCA1 c.5150del (p.Phe1717Serfs*3) variant alters the translational reading frame of the BRCA1 mRNA and causes the premature termination of BRCA1 protein synthesis. This variant has been reported in the published literature in an individual with breast and/or ovarian cancer (PMID: 32438681 (2020)). This variant has not been reported in large, multi-ethnic general populations (Genome Aggregation Database, http://gnomad.broadinstitute.org). Based on the available information, this variant is classified as pathogenic.
Breast Cancer Information Core (BIC) (BRCA1) RCV000112511 SCV000145333 pathogenic Breast-ovarian cancer, familial, susceptibility to, 1 2004-02-20 no assertion criteria provided clinical testing

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