Submissions for variant NM_007363.5(NONO):c.731dup (p.Asn244fs)

dbSNP: rs1555950011

Total submissions: 2

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Rady Children's Institute for Genomic Medicine, Rady Children's Hospital San Diego	RCV003335436	SCV004046356	pathogenic	Syndromic X-linked intellectual disability 34		criteria provided, single submitter	clinical testing	This frameshifting variant in exon 6 of 12 introduces a premature stop codon and is therefore predicted to result in loss of normal protein function through either protein truncation or nonsense-mediated mRNA decay (NMD). This variant has not been previously reported or functionally characterized in the literature to our knowledge. Loss-of-function variation in NONO is a known mechanism of disease for X-linked syndromic intellectual developmental disorder-34 (MRXS34) (PMID: 26571461, 27329731, 27550220, 32397791). The NONO gene is highly constrained (Z-score= 3.59 and pLI = 0.99), which suggests it is intolerant to variation. The c.731dup (p.Asn244LysfsTer21) variant is absent from the gnomAD population database and thus is presumed to be rare. Analysis of the parental samples was negative for the variant, indicating this variant likely occurred as a de novo event. Based on the available evidence, the c.731dup (p.Asn244LysfsTer21) variant is classified as Pathogenic.
Donald Williams Parsons Laboratory, Baylor College of Medicine	RCV000505623	SCV000599942	other	Medulloblastoma	2016-05-01	no assertion criteria provided	clinical testing