Total submissions: 4
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| Illumina Laboratory Services, |
RCV000332744 | SCV000399108 | uncertain significance | Deficiency of malonyl-CoA decarboxylase | 2018-01-13 | criteria provided, single submitter | clinical testing | This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease. |
| Genomic Research Center, |
RCV000332744 | SCV000784425 | uncertain significance | Deficiency of malonyl-CoA decarboxylase | 2018-03-05 | criteria provided, single submitter | clinical testing | |
| Labcorp Genetics |
RCV000332744 | SCV001115193 | benign | Deficiency of malonyl-CoA decarboxylase | 2025-01-23 | criteria provided, single submitter | clinical testing | |
| Women's Health and Genetics/Laboratory Corporation of America, |
RCV004800385 | SCV005422453 | uncertain significance | not specified | 2024-10-10 | criteria provided, single submitter | clinical testing | Variant summary: MLYCD c.1328G>C (p.Gly443Ala) results in a non-conservative amino acid change located in the Malonyl-CoA decarboxylase, C-terminal domain (IPR007956) of the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 0.00024 in 1613784 control chromosomes, predominantly at a frequency of 8.5e-05 within the Non-Finnish European subpopulation in the gnomAD database (gnomAD v4.1.0). To our knowledge, no occurrence of c.1328G>C in individuals affected with Deficiency Of Malonyl-CoA Decarboxylase and no experimental evidence demonstrating its impact on protein function have been reported. ClinVar contains an entry for this variant (Variation ID: 320735). Based on the evidence outlined above, the variant was classified as uncertain significance. |