ClinVar Miner

Submissions for variant NM_012463.4(ATP6V0A2):c.2327G>A (p.Arg776His)

gnomAD frequency: 0.00006  dbSNP: rs758922111
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001954397 SCV002242279 uncertain significance ALG9 congenital disorder of glycosylation 2022-07-12 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 776 of the ATP6V0A2 protein (p.Arg776His). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with ATP6V0A2-related conditions. ClinVar contains an entry for this variant (Variation ID: 1462973). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The histidine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002479600 SCV002791224 uncertain significance Cutis laxa with osteodystrophy; Wrinkly skin syndrome 2021-08-17 criteria provided, single submitter clinical testing
GeneDx RCV003149012 SCV003837264 uncertain significance not provided 2023-03-06 criteria provided, single submitter clinical testing Has not been previously published as pathogenic or benign to our knowledge; In silico analysis supports that this missense variant does not alter protein structure/function

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