ClinVar Miner

Submissions for variant NM_013275.6(ANKRD11):c.3097A>T (p.Ser1033Cys)

gnomAD frequency: 0.00003  dbSNP: rs201929972
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Institute for Genomic Medicine (IGM) Clinical Laboratory, Nationwide Children's Hospital RCV000736054 SCV000864266 likely benign not specified 2017-04-26 criteria provided, single submitter clinical testing BP1, BP4; This variant is a missense alteration in a gene for which primarily truncating variants are known to cause disease, and is predicted to be tolerated by multiple functional prediction tools.
Invitae RCV003640937 SCV004550680 uncertain significance KBG syndrome 2023-10-03 criteria provided, single submitter clinical testing This sequence change replaces serine, which is neutral and polar, with cysteine, which is neutral and slightly polar, at codon 1033 of the ANKRD11 protein (p.Ser1033Cys). This variant is present in population databases (rs201929972, gnomAD 0.004%). This variant has not been reported in the literature in individuals affected with ANKRD11-related conditions. ClinVar contains an entry for this variant (Variation ID: 599428). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt ANKRD11 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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