ClinVar Miner

Submissions for variant NM_013296.5(GPSM2):c.2043G>A (p.Ser681=)

gnomAD frequency: 0.00176  dbSNP: rs140949805
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Total submissions: 7
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine RCV000038782 SCV000062460 benign not specified 2012-05-07 criteria provided, single submitter clinical testing "Ser681Ser in Exon 15 of GPSM2: This variant is not expected to have clinical si gnificance because it does not alter an amino acid residue, is not located withi n the splice consensus sequence, and has been identified in 0.4% (25/7020) of Eu ropean American chromosomes from a broad population by the NHLBI Exome Sequencin g Project (http://evs.gs.washington.edu/EVS; dbSNP rs140949805)."
GeneDx RCV000728743 SCV000523815 likely benign not provided 2021-02-15 criteria provided, single submitter clinical testing
Eurofins Ntd Llc (ga) RCV000728743 SCV000856352 uncertain significance not provided 2017-09-01 criteria provided, single submitter clinical testing
Invitae RCV000728743 SCV001110936 likely benign not provided 2024-01-22 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV001097788 SCV001254101 uncertain significance Chudley-McCullough syndrome 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Genetic Services Laboratory, University of Chicago RCV000038782 SCV002065828 likely benign not specified 2018-04-24 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV000728743 SCV004124154 likely benign not provided 2022-11-01 criteria provided, single submitter clinical testing GPSM2: BP4, BP7

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