ClinVar Miner

Submissions for variant NM_014009.4(FOXP3):c.253C>T (p.Arg85Trp)

gnomAD frequency: 0.00004  dbSNP: rs376715533
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001316091 SCV001506694 uncertain significance Insulin-dependent diabetes mellitus secretory diarrhea syndrome 2023-07-19 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt FOXP3 protein function. ClinVar contains an entry for this variant (Variation ID: 1017006). This variant has not been reported in the literature in individuals affected with FOXP3-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 85 of the FOXP3 protein (p.Arg85Trp).
Fulgent Genetics, Fulgent Genetics RCV001316091 SCV002788157 uncertain significance Insulin-dependent diabetes mellitus secretory diarrhea syndrome 2022-04-11 criteria provided, single submitter clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ RCV001724292 SCV001951788 uncertain significance not provided no assertion criteria provided clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center RCV001724292 SCV001966707 uncertain significance not provided no assertion criteria provided clinical testing

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