ClinVar Miner

Submissions for variant NM_014009.4(FOXP3):c.836C>T (p.Ser279Phe)

gnomAD frequency: 0.00002  dbSNP: rs781902347
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001917466 SCV002165441 uncertain significance Insulin-dependent diabetes mellitus secretory diarrhea syndrome 2022-02-21 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). This variant has not been reported in the literature in individuals affected with FOXP3-related conditions. This variant is present in population databases (rs781902347, gnomAD 0.02%). This sequence change replaces serine, which is neutral and polar, with phenylalanine, which is neutral and non-polar, at codon 279 of the FOXP3 protein (p.Ser279Phe).

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