ClinVar Miner

Submissions for variant NM_014140.4(SMARCAL1):c.148A>G (p.Lys50Glu)

dbSNP: rs2106014433
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001947207 SCV002132330 uncertain significance Schimke immuno-osseous dysplasia 2021-01-28 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant has not been reported in the literature in individuals with SMARCAL1-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces lysine with glutamic acid at codon 50 of the SMARCAL1 protein (p.Lys50Glu). The lysine residue is weakly conserved and there is a small physicochemical difference between lysine and glutamic acid.

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