ClinVar Miner

Submissions for variant NM_014141.6(CNTNAP2):c.98-1G>A

dbSNP: rs2129185949
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001379813 SCV001577685 likely pathogenic Cortical dysplasia-focal epilepsy syndrome 2020-01-21 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in CNTNAP2 are known to be pathogenic (PMID: 19896112, 21827697, 25045150, 26843181, 27439707). This variant has not been reported in the literature in individuals with CNTNAP2-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change affects an acceptor splice site in intron 1 of the CNTNAP2 gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product.

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