ClinVar Miner

Submissions for variant NM_014159.7(SETD2):c.1661G>A (p.Arg554His)

gnomAD frequency: 0.00004  dbSNP: rs375514539
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001215079 SCV001386800 uncertain significance Luscan-Lumish syndrome 2022-12-02 criteria provided, single submitter clinical testing This variant has not been reported in the literature in individuals affected with SETD2-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt SETD2 protein function. ClinVar contains an entry for this variant (Variation ID: 944637). This variant is present in population databases (rs375514539, gnomAD 0.0009%). This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 554 of the SETD2 protein (p.Arg554His).

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