ClinVar Miner

Submissions for variant NM_014363.6(SACS):c.10938_10941del (p.Lys3646fs)

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002598743 SCV003490030 pathogenic Spastic paraplegia 2022-09-30 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. This variant disrupts a region of the SACS protein in which other variant(s) (p.Asn4549Asp) have been determined to be pathogenic (PMID: 15156359, 21507954). This suggests that this is a clinically significant region of the protein, and that variants that disrupt it are likely to be disease-causing. This variant has not been reported in the literature in individuals affected with SACS-related conditions. This variant is present in population databases (no rsID available, gnomAD 0.0009%). This sequence change creates a premature translational stop signal (p.Lys3646Asnfs*4) in the SACS gene. While this is not anticipated to result in nonsense mediated decay, it is expected to disrupt the last 934 amino acid(s) of the SACS protein.
Baylor Genetics RCV003475510 SCV004202283 pathogenic Charlevoix-Saguenay spastic ataxia 2022-12-21 criteria provided, single submitter clinical testing

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