ClinVar Miner

Submissions for variant NM_014714.4(IFT140):c.3142_3144del

dbSNP: rs754866110
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001361415 SCV001557391 uncertain significance Saldino-Mainzer syndrome 2022-08-21 criteria provided, single submitter clinical testing This variant, c.3142_3144del, results in the deletion of 1 amino acid(s) of the IFT140 protein (p.Glu1048del), but otherwise preserves the integrity of the reading frame. This variant is present in population databases (rs754866110, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with IFT140-related conditions. ClinVar contains an entry for this variant (Variation ID: 1053111). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002493844 SCV002798253 uncertain significance Saldino-Mainzer syndrome; Retinitis pigmentosa 80 2022-02-03 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV004753296 SCV005341825 uncertain significance IFT140-related disorder 2024-04-17 no assertion criteria provided clinical testing The IFT140 c.3142_3144delGAG variant is predicted to result in an in-frame deletion (p.Glu1048del). To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.016% of alleles in individuals of European (Non-Finnish) descent in gnomAD. At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

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