ClinVar Miner

Submissions for variant NM_014874.4(MFN2):c.1375C>T (p.Leu459Phe)

dbSNP: rs1639321356
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV001813076 SCV001473508 uncertain significance not provided 2020-04-17 criteria provided, single submitter clinical testing The MFN2 c.1375C>T; p.Leu459Phe variant, to our knowledge, is not reported in the medical literature or gene-specific databases. This variant is also absent from general population databases (Exome Variant Server, Genome Aggregation Database), indicating it is not a common polymorphism. The leucine at codon 459 is highly conserved, and computational analyses (SIFT, PolyPhen-2) predict that this variant is deleterious. However, given the lack of clinical and functional data, the significance of the p.Leu459Phe variant is uncertain at this time.
Labcorp Genetics (formerly Invitae), Labcorp RCV003581784 SCV004283243 uncertain significance Charcot-Marie-Tooth disease type 2 2023-06-23 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt MFN2 protein function. ClinVar contains an entry for this variant (Variation ID: 994113). This variant has not been reported in the literature in individuals affected with MFN2-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces leucine, which is neutral and non-polar, with phenylalanine, which is neutral and non-polar, at codon 459 of the MFN2 protein (p.Leu459Phe).

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