ClinVar Miner

Submissions for variant NM_014946.3(SPAST):c.871-1G>C (rs1057524526)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000420305 SCV000535796 pathogenic not provided 2017-02-09 criteria provided, single submitter clinical testing The c.871-1 G>C variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. It is not observed in large population cohorts (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). The c.871-1 G>C splice site variant destroys the natural splice acceptor site for intron 5. It is predicted to cause abnormal gene splicing, either leading to an abnormal message that is subject to nonsense-mediated mRNA decay, or to an abnormal protein product if the message is used for protein translation. Therefore, this variant is likely pathogenic; however, the possibility that it is benign cannot be excluded.

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