ClinVar Miner

Submissions for variant NM_014956.5(CEP164):c.1474G>A (p.Glu492Lys)

dbSNP: rs757278608
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001051266 SCV001215411 uncertain significance Nephronophthisis 15 2022-09-27 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C15". The lysine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. ClinVar contains an entry for this variant (Variation ID: 847670). This variant has not been reported in the literature in individuals affected with CEP164-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glutamic acid, which is acidic and polar, with lysine, which is basic and polar, at codon 492 of the CEP164 protein (p.Glu492Lys).
Fulgent Genetics, Fulgent Genetics RCV001051266 SCV002801355 uncertain significance Nephronophthisis 15 2022-02-24 criteria provided, single submitter clinical testing

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