ClinVar Miner

Submissions for variant NM_014956.5(CEP164):c.3484C>T (p.Arg1162Cys)

dbSNP: rs138487235
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001205717 SCV001376987 uncertain significance Nephronophthisis 15 2022-02-10 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 1162 of the CEP164 protein (p.Arg1162Cys). This variant is present in population databases (rs138487235, gnomAD 0.007%). This variant has not been reported in the literature in individuals affected with CEP164-related conditions. ClinVar contains an entry for this variant (Variation ID: 936829). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The cysteine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV001205717 SCV002816534 uncertain significance Nephronophthisis 15 2021-10-29 criteria provided, single submitter clinical testing

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