ClinVar Miner

Submissions for variant NM_014956.5(CEP164):c.3944A>G (p.Tyr1315Cys)

gnomAD frequency: 0.00001  dbSNP: rs1171979946
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001044751 SCV001208566 uncertain significance Nephronophthisis 15 2022-08-15 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. ClinVar contains an entry for this variant (Variation ID: 842347). This variant has not been reported in the literature in individuals affected with CEP164-related conditions. The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This sequence change replaces tyrosine, which is neutral and polar, with cysteine, which is neutral and slightly polar, at codon 1315 of the CEP164 protein (p.Tyr1315Cys).

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