ClinVar Miner

Submissions for variant NM_015046.7(SETX):c.1869A>C (p.Glu623Asp) (rs139200312)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000794428 SCV000933834 uncertain significance Amyotrophic lateral sclerosis type 4; Spinocerebellar ataxia, autosomal recessive, with axonal neuropathy 2 2019-11-13 criteria provided, single submitter clinical testing This sequence change replaces glutamic acid with aspartic acid at codon 623 of the SETX protein (p.Glu623Asp). The glutamic acid residue is moderately conserved and there is a small physicochemical difference between glutamic acid and aspartic acid. This variant is present in population databases (rs139200312, ExAC 0.02%). This variant has been observed in an individual affected with sporadic amyotrophic lateral sclerosis (PMID: 25382069). ClinVar contains an entry for this variant (Variation ID: 155743). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Athena Diagnostics Inc RCV000143814 SCV001145536 uncertain significance not provided 2018-09-12 criteria provided, single submitter clinical testing
Northcott Neuroscience Laboratory, ANZAC Research Institute RCV000143814 SCV000188707 non-pathogenic not provided no assertion criteria provided not provided Converted during submission to Benign.

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