ClinVar Miner

Submissions for variant NM_015046.7(SETX):c.2005A>T (p.Asn669Tyr)

gnomAD frequency: 0.00001  dbSNP: rs143727702
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000537094 SCV000645235 likely benign Amyotrophic lateral sclerosis type 4; Spinocerebellar ataxia, autosomal recessive, with axonal neuropathy 2 2022-07-11 criteria provided, single submitter clinical testing
Athena Diagnostics Inc RCV000992930 SCV001145537 uncertain significance not provided 2018-12-28 criteria provided, single submitter clinical testing
Ambry Genetics RCV002420466 SCV002724261 uncertain significance Inborn genetic diseases 2021-05-05 criteria provided, single submitter clinical testing The p.N669Y variant (also known as c.2005A>T), located in coding exon 8 of the SETX gene, results from an A to T substitution at nucleotide position 2005. The asparagine at codon 669 is replaced by tyrosine, an amino acid with dissimilar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Based on the supporting evidence, this variant is unlikely to be causative of autosomal dominant juvenile amyotrophic lateral sclerosis 4 (ALS4); however, its contribution to the development of autosomal recessive spinocerebellar ataxia with axonal neuropathy 2 (SCAN2) is uncertain.

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