ClinVar Miner

Submissions for variant NM_015164.4(PLEKHM2):c.8C>T (p.Pro3Leu)

gnomAD frequency: 0.00001  dbSNP: rs866837651
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001046005 SCV001209886 uncertain significance Dilated Cardiomyopathy, Recessive 2023-11-02 criteria provided, single submitter clinical testing This sequence change replaces proline, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 3 of the PLEKHM2 protein (p.Pro3Leu). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with PLEKHM2-related conditions. ClinVar contains an entry for this variant (Variation ID: 843391). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV003259050 SCV003949963 uncertain significance Inborn genetic diseases 2023-05-03 criteria provided, single submitter clinical testing The c.8C>T (p.P3L) alteration is located in exon 1 (coding exon 1) of the PLEKHM2 gene. This alteration results from a C to T substitution at nucleotide position 8, causing the proline (P) at amino acid position 3 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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