ClinVar Miner

Submissions for variant NM_015272.5(RPGRIP1L):c.1372G>T (p.Glu458Ter)

gnomAD frequency: 0.00001  dbSNP: rs776941281
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001384296 SCV001583748 pathogenic Familial aplasia of the vermis; Meckel-Gruber syndrome 2023-07-18 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Glu458*) in the RPGRIP1L gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in RPGRIP1L are known to be pathogenic (PMID: 17558409). For these reasons, this variant has been classified as Pathogenic. ClinVar contains an entry for this variant (Variation ID: 1071757). This variant has not been reported in the literature in individuals affected with RPGRIP1L-related conditions. This variant is present in population databases (rs776941281, gnomAD 0.003%).
GeneDx RCV001562284 SCV001785023 likely pathogenic not provided 2020-07-02 criteria provided, single submitter clinical testing Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed at a significant frequency in large population cohorts (Lek et al., 2016); Has not been previously published as pathogenic or benign to our knowledge
Revvity Omics, Revvity RCV001562284 SCV002019894 pathogenic not provided 2020-10-30 criteria provided, single submitter clinical testing
Fulgent Genetics, Fulgent Genetics RCV002476726 SCV002795085 likely pathogenic Joubert syndrome 7; Meckel syndrome, type 5; COACH syndrome 3 2022-04-11 criteria provided, single submitter clinical testing

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