ClinVar Miner

Submissions for variant NM_015272.5(RPGRIP1L):c.1709A>G (p.Lys570Arg)

gnomAD frequency: 0.00014  dbSNP: rs111459222
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000636947 SCV000758395 uncertain significance Familial aplasia of the vermis; Meckel-Gruber syndrome 2022-10-25 criteria provided, single submitter clinical testing This sequence change replaces lysine, which is basic and polar, with arginine, which is basic and polar, at codon 570 of the RPGRIP1L protein (p.Lys570Arg). This variant is present in population databases (rs111459222, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with RPGRIP1L-related conditions. ClinVar contains an entry for this variant (Variation ID: 530893). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt RPGRIP1L protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV001549364 SCV001769500 uncertain significance not provided 2022-10-12 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Fulgent Genetics, Fulgent Genetics RCV002483809 SCV002793736 uncertain significance Joubert syndrome 7; Meckel syndrome, type 5; COACH syndrome 3 2022-02-08 criteria provided, single submitter clinical testing
Natera, Inc. RCV001271281 SCV001452354 uncertain significance Familial aplasia of the vermis 2020-09-16 no assertion criteria provided clinical testing

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