ClinVar Miner

Submissions for variant NM_015272.5(RPGRIP1L):c.1913A>G (p.Tyr638Cys)

dbSNP: rs981992752
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002025743 SCV002291458 uncertain significance Familial aplasia of the vermis; Meckel-Gruber syndrome 2022-03-10 criteria provided, single submitter clinical testing This sequence change replaces tyrosine, which is neutral and polar, with cysteine, which is neutral and slightly polar, at codon 638 of the RPGRIP1L protein (p.Tyr638Cys). This variant is present in population databases (no rsID available, gnomAD 0.006%). This variant has not been reported in the literature in individuals affected with RPGRIP1L-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002479743 SCV002804042 uncertain significance Joubert syndrome 7; Meckel syndrome, type 5; COACH syndrome 3 2021-12-27 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV004729031 SCV005338668 uncertain significance RPGRIP1L-related disorder 2024-06-07 no assertion criteria provided clinical testing The RPGRIP1L c.1913A>G variant is predicted to result in the amino acid substitution p.Tyr638Cys. To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.0054% of alleles in individuals of East Asian descent in gnomAD. At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

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