Total submissions: 1
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Invitae | RCV001205472 | SCV001376732 | likely pathogenic | Koolen-de Vries syndrome | 2019-11-06 | criteria provided, single submitter | clinical testing | This sequence change replaces alanine with arginine at codon 590 of the KANSL1 protein (p.Ala590Arg). The alanine residue is highly conserved and there is a moderate physicochemical difference between alanine and arginine. This variant is not present in population databases (ExAC no frequency). This variant has been observed in individual(s) with clinical features of Koolen-de Vries syndrome (Invitae). In at least one individual the variant was observed to be de novo. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: Tolerated; PolyPhen-2: Probably Damaging; Align-GVGD: Class C0). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. |