ClinVar Miner

Submissions for variant NM_015506.3(MMACHC):c.799C>T (p.Arg267Trp)

gnomAD frequency: 0.00013  dbSNP: rs34258482
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000382334 SCV000357932 uncertain significance Disorders of Intracellular Cobalamin Metabolism 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
GeneDx RCV001782782 SCV000527610 uncertain significance not provided 2021-11-19 criteria provided, single submitter clinical testing Reported as a variant of uncertain significance in a compound heterozygous state with MMACHC p.(R153Q) in an unaffected infant with a false-positive newborn screen that showed elevated leucine (Wang et al. 2019); In silico analysis supports that this missense variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 30612563)
Labcorp Genetics (formerly Invitae), Labcorp RCV000876964 SCV001019615 likely benign Cobalamin C disease 2024-01-31 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV003967842 SCV004779709 likely benign MMACHC-related disorder 2023-03-15 criteria provided, single submitter clinical testing This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).
Natera, Inc. RCV001277247 SCV001464154 benign Methylmalonic acidemia with homocystinuria cblC 2020-05-03 no assertion criteria provided clinical testing

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