ClinVar Miner

Submissions for variant NM_015627.3(LDLRAP1):c.75T>A (p.Gly25=)

gnomAD frequency: 0.00005  dbSNP: rs1057515462
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001088453 SCV000357044 uncertain significance Hypercholesterolemia, familial, 4 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV001088453 SCV001004589 likely benign Hypercholesterolemia, familial, 4 2024-10-29 criteria provided, single submitter clinical testing
Ambry Genetics RCV002392831 SCV002674357 likely benign Cardiovascular phenotype 2022-06-01 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Natera, Inc. RCV001273188 SCV001455903 likely benign Familial hypercholesterolemia 2020-04-30 no assertion criteria provided clinical testing

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