ClinVar Miner

Submissions for variant NM_015631.6(TCTN3):c.499+5G>T

gnomAD frequency: 0.00002  dbSNP: rs1242330719
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001296115 SCV001485071 uncertain significance Orofacial-digital syndrome IV; Joubert syndrome 18 2022-07-05 criteria provided, single submitter clinical testing Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. ClinVar contains an entry for this variant (Variation ID: 1000037). This variant has not been reported in the literature in individuals affected with TCTN3-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change falls in intron 3 of the TCTN3 gene. It does not directly change the encoded amino acid sequence of the TCTN3 protein. It affects a nucleotide within the consensus splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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