Total submissions: 2
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Labcorp Genetics |
RCV003070883 | SCV003445703 | benign | not provided | 2023-09-27 | criteria provided, single submitter | clinical testing | |
Women's Health and Genetics/Laboratory Corporation of America, |
RCV003317642 | SCV004021133 | uncertain significance | not specified | 2023-06-19 | criteria provided, single submitter | clinical testing | Variant summary: NBAS c.1361C>G (p.Pro454Arg) results in a non-conservative amino acid change in the encoded protein sequence. Three of five in-silico tools predict a benign effect of the variant on protein function. The variant allele was found at a frequency of 6.4e-05 in 249556 control chromosomes (gnomAD). This frequency is not significantly higher than estimated for a pathogenic variant in NBAS causing Liver Failure Acute Infantile, Type 2 (6.4e-05 vs 0.0011), allowing no conclusion about variant significance. c.1361C>G has been reported in the literature in compound heterozygous individuals with features of NBAS-related conditions without indication of acute liver failure and without strong evidence of causality (Li_2020, Bi_2022). These reports do not provide unequivocal conclusions about association of the variant with Liver Failure Acute Infantile, Type 2. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 32812336, 35902954). One submitter has cited a clinical-significance assessment for this variant to ClinVar after 2014 and has classified the variant as benign. Based on the evidence outlined above, the variant was classified as uncertain significance. |