ClinVar Miner

Submissions for variant NM_016032.4(ZDHHC9):c.160G>A (p.Ala54Thr)

gnomAD frequency: 0.00002  dbSNP: rs1003990057
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001239527 SCV001412404 uncertain significance Syndromic X-linked intellectual disability Raymond type 2023-06-24 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt ZDHHC9 protein function. ClinVar contains an entry for this variant (Variation ID: 965153). This variant has not been reported in the literature in individuals affected with ZDHHC9-related conditions. This variant is present in population databases (no rsID available, gnomAD 0.008%), including at least one homozygous and/or hemizygous individual. This sequence change replaces alanine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 54 of the ZDHHC9 protein (p.Ala54Thr).

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