ClinVar Miner

Submissions for variant NM_016138.5(COQ7):c.161G>A (p.Arg54Gln)

gnomAD frequency: 0.00001  dbSNP: rs770654508
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Genomic Research Center, Shahid Beheshti University of Medical Sciences RCV000714574 SCV000845278 uncertain significance Primary coenzyme Q10 deficiency 8 2018-08-07 criteria provided, single submitter clinical testing
Victorian Clinical Genetics Services, Murdoch Childrens Research Institute RCV000714574 SCV002768318 uncertain significance Primary coenzyme Q10 deficiency 8 2022-02-02 criteria provided, single submitter clinical testing Based on the classification scheme VCGS_Germline_v1.3.4, this variant is classified as VUS-3A. Following criteria are met: 0102 - Loss of function is a known mechanism of disease in this gene and is associated with primary coenzyme Q10 deficiency 8 (MIM#616733). (I) 0106 - This gene is associated with autosomal recessive disease. (I) 0200 - Variant is predicted to result in a missense amino acid change from arginine to glutamine. (I) 0251 - This variant is heterozygous. (I) 0304 - Variant is present in gnomAD (v2) <0.01 for a recessive condition (3 heterozygotes, 0 homozygotes). (SP) 0309 - An alternative amino acid change at the same position has been observed in gnomAD (v2) (4 heterozygotes, 0 homozygotes). (I) 0502 - Missense variant with conflicting in silico predictions and uninformative conservation. (I) 0600 - Variant is located in the annotated ubiquinone biosynthesis protein COQ7 domain (DECIPHER). (I) 0705 - No comparable missense variants have previous evidence for pathogenicity. (I) 0809 - Previous evidence of pathogenicity for this variant is inconclusive. This variant has been reported once as uncertain significance in ClinVar. It has also been reported in a compound heterozygous state and causative for primary CoQ10 deficiency in an individual (Shinawi, M. and Lasio, L. (2017) conference abstract). (I) 0905 - No published segregation evidence has been identified for this variant. (I) 1007 - No published functional evidence has been identified for this variant. (I) 1206 - This variant has been shown to be paternally inherited (by trio analysis). (I) Legend: (SP) - Supporting pathogenic, (I) - Information, (SB) - Supporting benign
CeGaT Center for Human Genetics Tuebingen RCV003420273 SCV004141243 uncertain significance not provided 2023-08-01 criteria provided, single submitter clinical testing COQ7: PM2, PM3:Supporting, PS3:Supporting
OMIM RCV000714574 SCV003936813 pathogenic Primary coenzyme Q10 deficiency 8 2024-01-31 no assertion criteria provided literature only
OMIM RCV003492154 SCV004242173 pathogenic Neuronopathy, distal hereditary motor, autosomal recessive 9 2024-01-31 no assertion criteria provided literature only

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