ClinVar Miner

Submissions for variant NM_016169.4(SUFU):c.1445C>T (p.Pro482Leu)

gnomAD frequency: 0.00020  dbSNP: rs765358771
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000462118 SCV000557084 likely benign Gorlin syndrome; Medulloblastoma 2024-01-10 criteria provided, single submitter clinical testing
Ambry Genetics RCV000567793 SCV000675285 benign Hereditary cancer-predisposing syndrome 2022-07-28 criteria provided, single submitter clinical testing This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Illumina Laboratory Services, Illumina RCV001105629 SCV001262614 uncertain significance Medulloblastoma 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Institute for Clinical Genetics, University Hospital TU Dresden, University Hospital TU Dresden RCV003139675 SCV002011613 uncertain significance not provided 2021-11-03 criteria provided, single submitter clinical testing
Revvity Omics, Revvity RCV003139675 SCV003818143 uncertain significance not provided 2022-09-01 criteria provided, single submitter clinical testing
GeneDx RCV003139675 SCV003925042 uncertain significance not provided 2023-05-09 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant does not alter protein structure/function; Observed in an individual with high grade glioma in published literature (Zhang et al., 2015); This variant is associated with the following publications: (PMID: 23718828, 12426310, 26580448)

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