ClinVar Miner

Submissions for variant NM_016169.4(SUFU):c.146C>T (p.Pro49Leu)

gnomAD frequency: 0.00001  dbSNP: rs1479128337
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001324105 SCV001515047 uncertain significance Gorlin syndrome; Medulloblastoma 2022-03-13 criteria provided, single submitter clinical testing This variant is not present in population databases (gnomAD no frequency). This sequence change replaces proline, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 49 of the SUFU protein (p.Pro49Leu). This variant has not been reported in the literature in individuals affected with SUFU-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0"). ClinVar contains an entry for this variant (Variation ID: 1023981).
Ambry Genetics RCV003294295 SCV003999970 uncertain significance Hereditary cancer-predisposing syndrome 2023-05-28 criteria provided, single submitter clinical testing The p.P49L variant (also known as c.146C>T), located in coding exon 1 of the SUFU gene, results from a C to T substitution at nucleotide position 146. The proline at codon 49 is replaced by leucine, an amino acid with similar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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