ClinVar Miner

Submissions for variant NM_016204.4(GDF2):c.646C>T (p.Arg216Trp)

gnomAD frequency: 0.00003  dbSNP: rs556004917
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001060968 SCV001225690 uncertain significance Telangiectasia, hereditary hemorrhagic, type 5 2021-08-13 criteria provided, single submitter clinical testing This sequence change replaces arginine with tryptophan at codon 216 of the GDF2 protein (p.Arg216Trp). The arginine residue is moderately conserved and there is a moderate physicochemical difference between arginine and tryptophan. This variant is present in population databases (rs556004917, ExAC 0.009%). This missense change has been observed in individual(s) with GDF2-related conditions (PMID: 31727138). ClinVar contains an entry for this variant (Variation ID: 855657). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV003380829 SCV004091775 likely benign Cardiovascular phenotype 2023-07-05 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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