Total submissions: 5
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| Gene |
RCV000521316 | SCV000617757 | uncertain significance | not provided | 2024-10-16 | criteria provided, single submitter | clinical testing | In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 34325055, 24123792, 35346193, 36401330) |
| Illumina Laboratory Services, |
RCV001128473 | SCV001287930 | uncertain significance | Autosomal recessive nonsyndromic hearing loss 3 | 2018-01-12 | criteria provided, single submitter | clinical testing | This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease. |
| Genomic Medicine Center of Excellence, |
RCV001128473 | SCV004809690 | uncertain significance | Autosomal recessive nonsyndromic hearing loss 3 | 2024-04-04 | criteria provided, single submitter | clinical testing | |
| Labcorp Genetics |
RCV000521316 | SCV005734237 | uncertain significance | not provided | 2024-06-18 | criteria provided, single submitter | clinical testing | This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 1282 of the MYO15A protein (p.Arg1282Trp). This variant is present in population databases (rs757155918, gnomAD 0.009%). This missense change has been observed in individual(s) with clinical features of MYO15A-related conditions and/or congenital severe hearing loss (PMID: 24123792, 28000701, 31581539, 34325055). ClinVar contains an entry for this variant (Variation ID: 449525). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt MYO15A protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. |
| Department of Pathology and Laboratory Medicine, |
RCV001128473 | SCV005919698 | uncertain significance | Autosomal recessive nonsyndromic hearing loss 3 | 2022-11-30 | criteria provided, single submitter | research |