ClinVar Miner

Submissions for variant NM_016239.4(MYO15A):c.7547C>T (p.Ala2516Val)

gnomAD frequency: 0.00009  dbSNP: rs201073816
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001002758 SCV000401183 uncertain significance Autosomal recessive nonsyndromic hearing loss 3 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Genetic Testing Center for Deafness, Department of Otolaryngology Head & Neck Surgery, Institute of Otolaryngology, Chinese PLA General Hospital RCV001002758 SCV000992401 uncertain significance Autosomal recessive nonsyndromic hearing loss 3 criteria provided, single submitter case-control
GeneDx RCV001753782 SCV001995900 uncertain significance not provided 2019-09-19 criteria provided, single submitter clinical testing In silico analysis, which includes protein predictors and evolutionary conservation, supports that this variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Labcorp Genetics (formerly Invitae), Labcorp RCV001753782 SCV002445860 benign not provided 2025-01-20 criteria provided, single submitter clinical testing
3billion RCV001002758 SCV002521552 uncertain significance Autosomal recessive nonsyndromic hearing loss 3 2022-05-22 criteria provided, single submitter clinical testing The variant is observed at an extremely low frequency in the gnomAD v2.1.1 dataset (total allele frequency: 0.018%). In silico tool predictions suggest no damaging effect of the variant on gene or gene product (REVEL: 0.17; 3Cnet: 0.00). Therefore, this variant is classified as uncertain significanceaccording to the recommendation of ACMG/AMP guideline.
Department of Pathology and Laboratory Medicine, Sinai Health System RCV001002758 SCV006058855 uncertain significance Autosomal recessive nonsyndromic hearing loss 3 2022-10-18 criteria provided, single submitter research

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