ClinVar Miner

Submissions for variant NM_017636.4(TRPM4):c.2674C>T (p.Arg892Cys)

gnomAD frequency: 0.00047  dbSNP: rs147854826
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000469849 SCV000414305 uncertain significance Progressive familial heart block type IB 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000469849 SCV000549930 benign Progressive familial heart block type IB 2024-01-21 criteria provided, single submitter clinical testing
GeneDx RCV001561513 SCV001784135 uncertain significance not provided 2019-07-24 criteria provided, single submitter clinical testing Identified in one individual with atrioventricular block who also harbors variants in the TNNI3K, SCN1B, and RYR2 genes in published literature (Daumy et al., 2016); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; This variant is associated with the following publications: (PMID: 30142439, 26820365)
Ambry Genetics RCV002429294 SCV002741318 likely benign Cardiovascular phenotype 2018-09-20 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Division of Human Genetics, Children's Hospital of Philadelphia RCV000469849 SCV000536899 uncertain significance Progressive familial heart block type IB 2016-07-19 no assertion criteria provided research

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