ClinVar Miner

Submissions for variant NM_017849.4(TMEM127):c.53C>T (p.Pro18Leu)

gnomAD frequency: 0.00036  dbSNP: rs377740271
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Total submissions: 7
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000231126 SCV000290383 benign Hereditary pheochromocytoma-paraganglioma 2024-02-01 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000266671 SCV000432549 benign Pheochromocytoma 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Ambry Genetics RCV000561595 SCV000675301 likely benign Hereditary cancer-predisposing syndrome 2019-03-26 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Quest Diagnostics Nichols Institute San Juan Capistrano RCV001800597 SCV002046920 benign not provided 2021-04-29 criteria provided, single submitter clinical testing
Sema4, Sema4 RCV000561595 SCV002527259 likely benign Hereditary cancer-predisposing syndrome 2021-09-29 criteria provided, single submitter curation
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV002271479 SCV002556119 likely benign not specified 2022-06-23 criteria provided, single submitter clinical testing
KCCC/NGS Laboratory, Kuwait Cancer Control Center RCV000266671 SCV004015620 benign Pheochromocytoma 2023-07-07 criteria provided, single submitter clinical testing

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