ClinVar Miner

Submissions for variant NM_017946.4(FKBP14):c.477+1G>A

gnomAD frequency: 0.00001  dbSNP: rs763168158
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001241627 SCV001414658 uncertain significance Ehlers-Danlos syndrome, kyphoscoliotic and deafness type 2022-08-06 criteria provided, single submitter clinical testing This sequence change affects a donor splice site in intron 3 of the FKBP14 gene. While this variant is not anticipated to result in nonsense mediated decay, it likely alters RNA splicing and results in a disrupted protein product. This variant is present in population databases (rs763168158, gnomAD 0.003%). This variant has not been reported in the literature in individuals affected with FKBP14-related conditions. ClinVar contains an entry for this variant (Variation ID: 966849). Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. This variant disrupts a region of the FKBP14 protein in which other variant(s) (p.Glu191del) have been observed in individuals with FKBP14-related conditions (PMID: 27149304). This suggests that this is a clinically significant region of the protein, and that variants that disrupt it are likely to be disease-causing. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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