ClinVar Miner

Submissions for variant NM_017950.4(CCDC40):c.1075C>T (p.Arg359Cys)

gnomAD frequency: 0.00001  dbSNP: rs370338926
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000690565 SCV000818254 uncertain significance Primary ciliary dyskinesia 2020-09-11 criteria provided, single submitter clinical testing This sequence change replaces arginine with cysteine at codon 359 of the CCDC40 protein (p.Arg359Cys). The arginine residue is highly conserved and there is a large physicochemical difference between arginine and cysteine. This variant is present in population databases (rs370338926, ExAC 0.02%). This variant has not been reported in the literature in individuals with CCDC40-related disease. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002547154 SCV003705419 uncertain significance Inborn genetic diseases 2021-07-14 criteria provided, single submitter clinical testing The c.1075C>T (p.R359C) alteration is located in exon 7 (coding exon 7) of the CCDC40 gene. This alteration results from a C to T substitution at nucleotide position 1075, causing the arginine (R) at amino acid position 359 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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