Submissions for variant NM_017950.4(CCDC40):c.3030T>C (p.Asp1010=)

gnomAD frequency: 0.71802  dbSNP: rs12952612

Total submissions: 11

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	RCV000155469	SCV000205161	benign	not specified	2013-02-21	criteria provided, single submitter	clinical testing	Asp1010Asp in exon 19 of CCDC40: This variant is not expected to have clinical s ignificance because it does not alter an amino acid residue and is not located w ithin the splice consensus sequence. It has been identified in 29.2% (1182/4046) of African American chromosomes from a broad population by the NHLBI Exome Sequ encing Project (http://evs.gs.washington.edu/EVS; dbSNP rs12952612).
PreventionGenetics, part of Exact Sciences	RCV000155469	SCV000313098	benign	not specified		criteria provided, single submitter	clinical testing
Illumina Laboratory Services, Illumina	RCV000301116	SCV000407220	benign	Primary ciliary dyskinesia	2016-06-14	criteria provided, single submitter	clinical testing
Illumina Laboratory Services, Illumina	RCV000265227	SCV000483684	benign	Glycogen storage disease, type II	2016-06-14	criteria provided, single submitter	clinical testing
Invitae	RCV000301116	SCV001000197	benign	Primary ciliary dyskinesia	2024-01-31	criteria provided, single submitter	clinical testing
Illumina Laboratory Services, Illumina	RCV000613730	SCV001281024	benign	Primary ciliary dyskinesia 15	2018-01-12	criteria provided, single submitter	clinical testing	This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Genome-Nilou Lab	RCV000613730	SCV001776152	benign	Primary ciliary dyskinesia 15	2021-07-14	criteria provided, single submitter	clinical testing
GeneDx	RCV001706030	SCV001843454	benign	not provided	2018-07-05	criteria provided, single submitter	clinical testing
Ambry Genetics	RCV000301116	SCV002753141	benign	Primary ciliary dyskinesia	2016-07-07	criteria provided, single submitter	clinical testing	This alteration is classified as benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	RCV000613730	SCV000733717	benign	Primary ciliary dyskinesia 15		no assertion criteria provided	clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center	RCV000155469	SCV001973198	benign	not specified		no assertion criteria provided	clinical testing