ClinVar Miner

Submissions for variant NM_018699.4(PRDM5):c.182G>A (p.Arg61His)

gnomAD frequency: 0.00003  dbSNP: rs777432357
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Genome Diagnostics Laboratory, The Hospital for Sick Children RCV002278060 SCV002566061 uncertain significance Ehlers-Danlos syndrome 2019-12-01 criteria provided, single submitter clinical testing
Ambry Genetics RCV002409632 SCV002715603 likely benign Cardiovascular phenotype 2021-12-16 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Labcorp Genetics (formerly Invitae), Labcorp RCV003096266 SCV003441930 uncertain significance not provided 2024-12-14 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 61 of the PRDM5 protein (p.Arg61His). This variant is present in population databases (rs777432357, gnomAD 0.03%). This variant has not been reported in the literature in individuals affected with PRDM5-related conditions. ClinVar contains an entry for this variant (Variation ID: 1702270). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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