ClinVar Miner

Submissions for variant NM_018834.6(MATR3):c.460C>T (p.Pro154Ser)

dbSNP: rs587777302
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000114432 SCV004278008 uncertain significance Amyotrophic lateral sclerosis type 21 2023-10-18 criteria provided, single submitter clinical testing This sequence change replaces proline, which is neutral and non-polar, with serine, which is neutral and polar, at codon 154 of the MATR3 protein (p.Pro154Ser). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with amyotrophic lateral sclerosis (PMID: 24686783). ClinVar contains an entry for this variant (Variation ID: 126563). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt MATR3 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
OMIM RCV000114432 SCV000148375 pathogenic Amyotrophic lateral sclerosis type 21 2014-03-30 no assertion criteria provided literature only

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