ClinVar Miner

Submissions for variant NM_019892.6(INPP5E):c.11A>T (p.Lys4Met)

dbSNP: rs1057306367
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001201990 SCV001373085 uncertain significance Familial aplasia of the vermis 2022-08-31 criteria provided, single submitter clinical testing This variant is present in population databases (no rsID available, gnomAD 0.02%). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt INPP5E protein function. ClinVar contains an entry for this variant (Variation ID: 933719). This variant has not been reported in the literature in individuals affected with INPP5E-related conditions. This sequence change replaces lysine, which is basic and polar, with methionine, which is neutral and non-polar, at codon 4 of the INPP5E protein (p.Lys4Met).
PreventionGenetics, part of Exact Sciences RCV003413986 SCV004116086 uncertain significance INPP5E-related condition 2023-12-14 criteria provided, single submitter clinical testing The INPP5E c.11A>T variant is predicted to result in the amino acid substitution p.Lys4Met. To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.021% of alleles in individuals of African descent in gnomAD. At this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

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