ClinVar Miner

Submissions for variant NM_019892.6(INPP5E):c.473dup (p.Gly158_Asn159insTer)

dbSNP: rs779450345
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001239214 SCV001412069 pathogenic Familial aplasia of the vermis 2024-10-28 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Asn159*) in the INPP5E gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in INPP5E are known to be pathogenic (PMID: 19668216, 23034536, 23386033, 28125082). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with INPP5E-related conditions. ClinVar contains an entry for this variant (Variation ID: 964895). For these reasons, this variant has been classified as Pathogenic.
Ocular Genomics Institute, Massachusetts Eye and Ear RCV001376431 SCV001573569 likely pathogenic Rod-cone dystrophy 2021-04-08 criteria provided, single submitter research The INPP5E c.473dup variant was identified in an individual with retinitis pigmentosa with a presumed recessive inheritance pattern. Through a review of available evidence we were able to apply the following criteria: PVS1, PM2. Based on this evidence we have classified this variant as Likely Pathogenic.
Fulgent Genetics, Fulgent Genetics RCV005050304 SCV005680022 likely pathogenic MORM syndrome; Joubert syndrome 1 2024-01-28 criteria provided, single submitter clinical testing

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