ClinVar Miner

Submissions for variant NM_020166.5(MCCC1):c.1792C>A (p.Leu598Met)

gnomAD frequency: 0.00075  dbSNP: rs138480247
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Total submissions: 7
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000482746 SCV000574027 uncertain significance not provided 2024-03-04 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge
Fulgent Genetics, Fulgent Genetics RCV000765716 SCV000897078 uncertain significance 3-methylcrotonyl-CoA carboxylase 1 deficiency 2018-10-31 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000765716 SCV001013808 likely benign 3-methylcrotonyl-CoA carboxylase 1 deficiency 2024-01-31 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000765716 SCV001306589 uncertain significance 3-methylcrotonyl-CoA carboxylase 1 deficiency 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Ambry Genetics RCV002525964 SCV003608254 likely benign Inborn genetic diseases 2022-01-27 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Revvity Omics, Revvity RCV000765716 SCV003810798 uncertain significance 3-methylcrotonyl-CoA carboxylase 1 deficiency 2021-02-18 criteria provided, single submitter clinical testing
Natera, Inc. RCV000765716 SCV001456486 uncertain significance 3-methylcrotonyl-CoA carboxylase 1 deficiency 2019-11-11 no assertion criteria provided clinical testing

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